# Publications ## RIC Acknowledgement and Authorship The following publications acknowledge the Research Instrumentation Core or include RIC staff as authors. Download 75 citations download- [BibTeX](/bibcite/export?pager_style=standard_pager&number_of_items=12&sort_field=bibcite_year--desc&taxonomy_filters=&&&format=bibtex) - [EndNote X3 XML](/bibcite/export?pager_style=standard_pager&number_of_items=12&sort_field=bibcite_year--desc&taxonomy_filters=&&&format=endnote8) - [EndNote 7 XML](/bibcite/export?pager_style=standard_pager&number_of_items=12&sort_field=bibcite_year--desc&taxonomy_filters=&&&format=endnote7) - [Endnote tagged](/bibcite/export?pager_style=standard_pager&number_of_items=12&sort_field=bibcite_year--desc&taxonomy_filters=&&&format=tagged) - [Marc](/bibcite/export?pager_style=standard_pager&number_of_items=12&sort_field=bibcite_year--desc&taxonomy_filters=&&&format=marc) - [PubMedId](/bibcite/export?pager_style=standard_pager&number_of_items=12&sort_field=bibcite_year--desc&taxonomy_filters=&&&format=pubmed_id) - [RIS](/bibcite/export?pager_style=standard_pager&number_of_items=12&sort_field=bibcite_year--desc&taxonomy_filters=&&&format=ris) ### 2025 Kamath T, Lodder B, Bilsel E, et al. [Hunger modulates exploration through suppression of dopamine signaling in the tail of the striatum.](/publication/hunger-modulates-exploration-through-suppression-dopamine-signaling-tail-striatum-0) *Neuron*. 2025. doi:10.1016/j.neuron.2025.09.009 Kamath T, Lodder B, Bilsel E, et al. [Hunger modulates exploration through suppression of dopamine signaling in the tail of the striatum.](/publication/hunger-modulates-exploration-through-suppression-dopamine-signaling-tail-striatum-0) *Neuron*. 2025. doi:10.1016/j.neuron.2025.09.009 - add\_circle do\_not\_disturb\_on Abstract Caloric depletion induces behavioral changes that help an animal find food and restore its homeostatic balance. Hunger increases exploration and risk-taking behavior, allowing an animal to forage for food despite risks; however, it is unknown which neural... Basnak MA, Kutschireiter A, Okubo TS, et al. [Multimodal cue integration and learning in a neural representation of head direction.](/publication/multimodal-cue-integration-and-learning-neural-representation-head-direction) *Nature neuroscience*. 2025;28(8):1729-1740. doi:10.1038/s41593-024-01823-z Basnak MA, Kutschireiter A, Okubo TS, et al. [Multimodal cue integration and learning in a neural representation of head direction.](/publication/multimodal-cue-integration-and-learning-neural-representation-head-direction) *Nature neuroscience*. 2025;28(8):1729-1740. doi:10.1038/s41593-024-01823-z - add\_circle do\_not\_disturb\_on Abstract Navigation requires us to take account of multiple spatial cues with varying levels of informativeness and learn their spatial relationships. Here we investigate this process in the Drosophila head direction system, which functions as a ring attractor and... Hartman AK, Collie MF, Kellogg E, Jin C, Holtz SL, Wilson RI. [A cell type in the visual system that receives feedback about limb movement.](/publication/cell-type-visual-system-receives-feedback-about-limb-movement) *Current biology : CB*. 2025;35(15):3697-3709.e4. doi:10.1016/j.cub.2025.06.055 Hartman AK, Collie MF, Kellogg E, Jin C, Holtz SL, Wilson RI. [A cell type in the visual system that receives feedback about limb movement.](/publication/cell-type-visual-system-receives-feedback-about-limb-movement) *Current biology : CB*. 2025;35(15):3697-3709.e4. doi:10.1016/j.cub.2025.06.055 - add\_circle do\_not\_disturb\_on Abstract Body movement often evokes strong changes in neural activity in visual brain regions. Some of this movement-related activity is locked to locomotion, while other activity is locked to the movements of particular body parts. Visual brain regions are... Eaton DS, Sánchez C, Gutiérrez-López L, et al. [Essentialome-Wide Multigenerational Imaging Reveals Mechanistic Origins of Cell Growth Laws.](/publication/essentialome-wide-multigenerational-imaging-reveals-mechanistic-origins-cell-growth) *bioRxiv : the preprint server for biology*. 2025. doi:10.1101/2025.06.10.658525 Eaton DS, Sánchez C, Gutiérrez-López L, et al. [Essentialome-Wide Multigenerational Imaging Reveals Mechanistic Origins of Cell Growth Laws.](/publication/essentialome-wide-multigenerational-imaging-reveals-mechanistic-origins-cell-growth) *bioRxiv : the preprint server for biology*. 2025. doi:10.1101/2025.06.10.658525 - add\_circle do\_not\_disturb\_on Abstract Optical Pooled Screening (OPS) enables precise measurement of pooled genetic libraries in single, highly multiplexed microscopy experiments, linking image-based phenotypes to genotypes at genome-scale. However, no method has combined large-scale OPS with... Kreeger LJ, Honnuraiah S, Maeker S, Shea S, Fishell G, Goodrich L. [An anatomical and physiological basis for flexible coincidence detection in the auditory system.](/publication/anatomical-and-physiological-basis-flexible-coincidence-detection-auditory-system) *eLife*. 2025;13. doi:10.7554/eLife.100492 Kreeger LJ, Honnuraiah S, Maeker S, Shea S, Fishell G, Goodrich L. [An anatomical and physiological basis for flexible coincidence detection in the auditory system.](/publication/anatomical-and-physiological-basis-flexible-coincidence-detection-auditory-system) *eLife*. 2025;13. doi:10.7554/eLife.100492 - add\_circle do\_not\_disturb\_on Abstract Animals navigate the auditory world by recognizing complex sounds, from the rustle of a predator to the call of a potential mate. This ability depends in part on the octopus cells of the auditory brainstem, which respond to multiple frequencies that... Yarmolinsky DA, Zeng X, MacKinnon-Booth N, et al. [Differential modification of ascending spinal outputs in acute and chronic pain states.](/publication/differential-modification-ascending-spinal-outputs-acute-and-chronic-pain-states) *Neuron*. 2025;113(8):1223-1239.e5. doi:10.1016/j.neuron.2025.01.031 Yarmolinsky DA, Zeng X, MacKinnon-Booth N, et al. [Differential modification of ascending spinal outputs in acute and chronic pain states.](/publication/differential-modification-ascending-spinal-outputs-acute-and-chronic-pain-states) *Neuron*. 2025;113(8):1223-1239.e5. doi:10.1016/j.neuron.2025.01.031 - add\_circle do\_not\_disturb\_on Abstract Pain hypersensitivity arises from the induction of plasticity in peripheral and spinal somatosensory neurons, which modifies nociceptive input to the brain, altering pain perception. We applied longitudinal calcium imaging of spinal dorsal projection... Collie MF, Jin C, Kellogg E, et al. [Specialized parallel pathways for adaptive control of visual object pursuit.](/publication/specialized-parallel-pathways-adaptive-control-visual-object-pursuit) *bioRxiv : the preprint server for biology*. 2025. doi:10.1101/2025.04.23.650240 Collie MF, Jin C, Kellogg E, et al. [Specialized parallel pathways for adaptive control of visual object pursuit.](/publication/specialized-parallel-pathways-adaptive-control-visual-object-pursuit) *bioRxiv : the preprint server for biology*. 2025. doi:10.1101/2025.04.23.650240 - add\_circle do\_not\_disturb\_on Abstract To pursue an unpredictably moving visual object, the brain must generate motor commands that continuously steer the object to the midline of the visual field via feedback. Behavior implies that visual pursuit relies on a feedback loop with flexible gain... Locantore J, Liu Y, White J, et al. [Mixed representations of choice direction and outcome by GABA/glutamate cotransmitting neurons in the entopeduncular nucleus.](/publication/mixed-representations-choice-direction-and-outcome-gabaglutamate-cotransmitting-neurons) *eLife*. 2025;13. doi:10.7554/eLife.100488 Locantore J, Liu Y, White J, et al. [Mixed representations of choice direction and outcome by GABA/glutamate cotransmitting neurons in the entopeduncular nucleus.](/publication/mixed-representations-choice-direction-and-outcome-gabaglutamate-cotransmitting-neurons) *eLife*. 2025;13. doi:10.7554/eLife.100488 - add\_circle do\_not\_disturb\_on Abstract The basal ganglia (BG) are an evolutionarily conserved and phylogenetically old set of sub-cortical nuclei that guide action selection, evaluation, and reinforcement. The entopeduncular nucleus (EP) is a major BG output nucleus that contains a population... Lodder B, Kamath T, Savenco E, et al. [Absolute measurement of fast and slow neuronal signals with fluorescence lifetime photometry at high temporal resolution.](/publication/absolute-measurement-fast-and-slow-neuronal-signals-fluorescence-lifetime-photometry) *bioRxiv : the preprint server for biology*. 2025. doi:10.1101/2025.01.10.632162 Lodder B, Kamath T, Savenco E, et al. [Absolute measurement of fast and slow neuronal signals with fluorescence lifetime photometry at high temporal resolution.](/publication/absolute-measurement-fast-and-slow-neuronal-signals-fluorescence-lifetime-photometry) *bioRxiv : the preprint server for biology*. 2025. doi:10.1101/2025.01.10.632162 - add\_circle do\_not\_disturb\_on Abstract The concentrations of extracellular and intracellular signaling molecules, such as dopamine and cAMP, change over both fast and slow timescales and impact downstream pathways in a cell-type specific manner. Fluorescence sensors currently used to monitor... Sarfatis A, Wang Y, Twumasi-Ankrah N, Moffitt JR. [Highly multiplexed spatial transcriptomics in bacteria.](/publication/highly-multiplexed-spatial-transcriptomics-bacteria) *Science (New York, N.Y.)*. 2025;387(6732):eadr0932. doi:10.1126/science.adr0932 Sarfatis A, Wang Y, Twumasi-Ankrah N, Moffitt JR. [Highly multiplexed spatial transcriptomics in bacteria.](/publication/highly-multiplexed-spatial-transcriptomics-bacteria) *Science (New York, N.Y.)*. 2025;387(6732):eadr0932. doi:10.1126/science.adr0932 - add\_circle do\_not\_disturb\_on Abstract Single-cell decisions made in complex environments underlie many bacterial phenomena. Image-based transcriptomics approaches offer an avenue to study such behaviors, yet these approaches have been hindered by the massive density of bacterial messenger RNA... Huey EL, Turecek J, Delisle MM, et al. [The auditory midbrain mediates tactile vibration sensing.](/publication/auditory-midbrain-mediates-tactile-vibration-sensing) *Cell*. 2025;188(1):104-120.e18. doi:10.1016/j.cell.2024.11.014 Huey EL, Turecek J, Delisle MM, et al. [The auditory midbrain mediates tactile vibration sensing.](/publication/auditory-midbrain-mediates-tactile-vibration-sensing) *Cell*. 2025;188(1):104-120.e18. doi:10.1016/j.cell.2024.11.014 - add\_circle do\_not\_disturb\_on Abstract Vibrations are ubiquitous in nature, shaping behavior across the animal kingdom. For mammals, mechanical vibrations acting on the body are detected by mechanoreceptors of the skin and deep tissues and processed by the somatosensory system, while sound... ### 2024 Hochbaum DR, Hulshof L, Urke A, et al. [Thyroid hormone remodels cortex to coordinate body-wide metabolism and exploration.](/publication/thyroid-hormone-remodels-cortex-coordinate-body-wide-metabolism-and-exploration) *Cell*. 2024;187(20):5679-5697.e23. doi:10.1016/j.cell.2024.07.041 Hochbaum DR, Hulshof L, Urke A, et al. [Thyroid hormone remodels cortex to coordinate body-wide metabolism and exploration.](/publication/thyroid-hormone-remodels-cortex-coordinate-body-wide-metabolism-and-exploration) *Cell*. 2024;187(20):5679-5697.e23. doi:10.1016/j.cell.2024.07.041 - add\_circle do\_not\_disturb\_on Abstract Animals adapt to environmental conditions by modifying the function of their internal organs, including the brain. To be adaptive, alterations in behavior must be coordinated with the functional state of organs throughout the body. 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